SEQUENCE ANALYSIS
MGEL'S Higher Plant (Spermatophyte) Sequence Analysis Pipelines
| Goal | MGEL Pipeline | Designer(s) | Status | Contact | ||||||
| Genome characterization based on random shotgun sequence analysis | Sequence Read Classification Pipeline (SRCP) | Chouvarine P, Saha S, and Peterson DG | In press | P. Chouvarine | ||||||
| Determination of gene- and/or repeat-enrichment via Cot-filtration and/or CBCS | Sequence Read Classification Pipeline (SRCP) | Chouvarine P, Saha S, and Peterson DG | In press | P. Chouvarine | ||||||
| Discovery and annotation of repetitive DNA | Repeat Sequence Analysis Pipeline (RSAP) | Chouvarine P, Saha S, and Peterson DG | In progress | P. Chouvarine | ||||||
| Assembly of BAC clones | BAC Sequence Assembly Pipeline (BSAP) | Chouvarine P, Saha S, and Peterson DG | In progress | P. Chouvarine |
How MGEL Sequence Files and Sequences are Named
Other Bioinformatics Topics: LIMS | Algorithm & Software Development | Intranet Development
