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PUBLICATIONS

Single copies of the following articles can be downloaded and printed for the reader's personal research and study.  To access the articles, Adobe Acrobat Reader must be installed on your computer.  If you don't have Adobe Acrobat Reader, you can download the program for free from the Adobe website.

To access a reprint quality version of a paper, click on the "PDF" link to its left.  To visit the website of the journal in which a paper appeared, click on the appropriate journal title hyperlink.

  PDF   SAHA S, BRIDGES S, MAGBANUA ZV, PETERSON DG (2008) Empirical comparison of ab initio repeat finding programs. Nucleic Acids Research 36: 2284-2294.  
         
  PDF   SAHA S, BRIDGES S, MAGBANUA ZV, PETERSON DG (2008) Computational approaches and tools used in identification of dispersed repetitive DNA sequences. Tropical Plant Biology 1: 85-96.  
         
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reprint		   CHOUVARINE P, SAHA S, PETERSON DG (2008) An automated, high-throughput sequence read classification pipeline for preliminary genome characterization.  Analytical Biochemistry 373: 78-87.  
         
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reprint 		  PLOMION C, CHAGNÉ D, POT D, KUMAR S, WILCOX P, BURDON R, PRAT D, PETERSON DG, PAIVA J, CHAUMEIL P, VENDRAMIN G, SEBASTIANI F, NELSON CD, ECHT C, SAVOLAINEN O, KUBISIAK T, CERVERA MT, ISLAM-FARIDI (2007) The Pines. In: Genome Mapping and Molecular Breeding in Plants, Vol. 7, Forest Trees. Edited by: Kole CR. Springer - Heidelberg, Berlin, New York, Tokyo; pp. 29-78 (ISBN: 978-3-540-34540-4).  
 
  PDF   DENNIS JH, FAN H-Y, REYNOLDS SM, YUAN G, MELDRIM JC, RICHTER DJ, PETERSON DG, RANDO OJ, NOBLE WS, KINGSTON RE (2007) Independent and complementary methods for large-scale structural analysis of mammalian chromatin. Genome Research 17: 928-939. Click here for Online Supplementary Material.  
 
  PDF   BUNGE J, EPSTEIN SS, PETERSON DG (2006) Comment on "Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil" Science 313: 918.  Click here for Supporting Online Material.  
 
  PDF   LAMOUREUX D, PETERSON DG, LI W, FELLERS JP, GILL BS (2005) The efficacy of Cot-based gene enrichment in wheat (Triticum aestivum L.).  Genome 48: 1120-1126.  
 
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Reprint 		  PETERSON DG (2005) Reduced representation strategies and their application to plant genomes.  In: The Handbook of Plant Genome Mapping: Genetic and Physical Mapping. Edited by: Meksem K, Kahl G. WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany. pp. 307-335 (ISBN: 978-3-527-31116-3).  
 
  PDF   WICKER T, ROBERTSON JS, SCHULZE SR, FELTUS FA, MAGRINI V, MORRISON JA, MARDIS ER, WILSON RK, PETERSON DG, PATERSON AH, IVARIE R (2005) The repetitive landscape of the chicken genome.  Genome Research 15: 126-136.  
 
  PDF   PATERSON AH, BOWERS JE, CHAPMAN BA, PETERSON DG, RONG J, WICKER TM (2004) Comparative genome analysis of monocots and dicots, toward characterization of angiosperm diversity.  Current Opinion in Biotechnology 15: 120-124.  
 
  PDF   PATERSON AH, BOWERS JE, PETERSON DG, ESTILL JC, CHAPMAN BA (2003) Structure and evolution of cereal genomes.  Current Opinion in Genetics and Development 13: 644-650.  
 
  PDF   PETERSON DG, WESSLER SR, PATERSON AH (2002B) Efficient capture of unique sequences from eukaryotic genomes. Trends In Genetics 18: 547-550.  Reprint made available at this site with permission from ELSEVIER SCIENCE.  
 
  PDF   PETERSON DG, SCHULZE SR, SCIARA EB, LEE SA, NAGEL A, JIANG N, TIBBETTS DC, WESSLER SR, PATERSON AH (2002A) Integration of Cot analysis, DNA cloning, and high-throughput sequencing facilitates genome characterization and gene discovery. Genome Research 12: 795-807. Click here for the Online Supplementary Data.  
 
  PDF   TOMKINS JP, PETERSON DG, YANG TJ, MAIN D, ABLETT EF, HENRY RJ, LEE LS, HOLTON TA, WATERS D, WING RA (2001B) Grape (Vitis vinifera L.) BAC library construction, preliminary STC analysis, and identification of clones associated with flavonoid and stilbene biosynthesis. American Journal of Enology and Viticulture 52: 287-291.  
 
  PDF   TOMKINS JP, PETERSON DG, YANG T, MAIN D, WILKINS TA, PATERSON AH, WING RA (2001a) Development of genomic resources for cotton (Gossypium hirsutum): BAC library construction, preliminary STC analysis, and identification of clones associated with fiber development. Molecular Breeding 8: 255-261.  
 
  PDF   DRAYE X, LIN Y-R, QIAN X-Y, BOWERS JE, BUROW GB, MORRELL PL, PETERSON DG, PRESTING GG, REN S-X, WING RA, PATERSON AH (2001) Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses, using the Sorghum genome as a foundation. Plant Physiology 125: 1325-1341.  
 
  PDF   PETERSON DG, TOMKINS JP, FRISCH DA, WING RA, PATERSON AH (2000) Construction of plant bacterial artificial chromosome libraries: An illustrated guide. Journal of Agricultural Genomics 5: http://wheat.pw.usda.gov/jag/.  
 
  PDF   PETERSON DG, LAPITAN NLV, STACK SM (1999) Localization of single- and low-copy sequences on tomato synaptonemal complex spreads using fluorescence in situ hybridization (FISH). Genetics 152: 427-439.  
 
  PDF   PETERSON DG, PEARSON WR, STACK SM (1998) Characterization of the tomato (Lycopersicon esculentum) genome using in vitro and in situ DNA reassociation. Genome 41: 346-356.  
 
  PDF   PETERSON DG, BOEHM KS, STACK SM (1997) Isolation of milligram quantities of nuclear DNA from tomato (Lycopersicon esculentum), a species containing high levels of polyphenolic compounds. Plant Molecular Biology Reporter 15: 148-153.  
 
  PDF   PETERSON DG, PRICE HJ, JOHNSTON JS, STACK SM (1996) DNA of content of heterochromatin and euchromatin in tomato (Lycopersicon esculentum) pachytene chromosomes. Genome 39: 77-82.  
 
  PDF   PETERSON DG, STACK SM, HEALY JL, DONOHOE BS, ANDERSON LK (1994) The relationship between synaptonemal complex length and genome size in four vertebrate classes (Osteicthyes, Reptilia, Aves, Mammalia). Chromosome Research 2: 153-162.